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Acore Documentation

Module examples

Overview
Input Formats

Analysis examples

Overview
Metabolomics data filtering
Normalization of samples
Batch correction of samples
Imputation data (MS-example)
Imputation (Metabolomics example)
Exploratory Analysis
Metabolomics drift correction
Differential regulation: T-test for two groups
Differential regulation: ANOVA across more than two groups and posthoc t-tests
Differential regulation: ANCOVA for two groups
Enrichment analysis
Permutation Tests

Entire Reanalysis

Data Analysis PXD040621

Method discussions

Empirical FDR for overrepresentation analysis: comparison with mulea

Example dataset (preprocessing)

Use proteomics data from PRIDE Data (adipose tissue)
Download from journal (ovarian cancer proteome)
Alzheimer’s MS-based proteomics
MTBLS13411

Modules

acore package

MISC:

LLM documentation
Contributing
Credits
History
Docs creation

Repository
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acore.wgcna_analysis module

acore.wgcna_analysis module#

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LLM documentation

By Multi-omics Network Analytics Group, Sebastián Ayala Ruano, Henry Webel, Alberto Santos

© Copyright 2026, Multi-omics Network Analytics Group.