acore.enrichment_analysis.statistical_tests.fisher module

Run fisher’s exact test on two groups using scipy.stats.fisher_exact.

run_fisher(group1: list[int], group2: list[int], alternative: str = 'two-sided') → tuple[float, float]

Run fisher’s exact test on two groups using scipy.stats.fisher_exact.

Example:

# annotated   not-annotated
# group1      a               b
# group2      c               d


odds, pvalue = stats.fisher_exact(group1=[a, b],
                                  group2 =[c, d]
                )